Hosein Mohimani
Associate Professor, Ray and Stephanie Lane Computational Biology Department
Administrative Assistant: Ally Ricarte
Lab Members
Abhinav Adduri
Ph.D. Student
Mustafa Guler
Ph.D. Student
Muqing Zhou
Research Associate
Highlighted Publications
Mongia, M., Guler, M. & Mohimani, H. An interpretable machine learning approach to identify mechanism of action of antibiotics. Sci Rep 12, 10342 (2022).
Justin J. J. van der Hooft, Hosein Mohimani, Anelize Bauermeister, Pieter C. Dorrestein, Katherine R. Duncan, Marnix Medema, Linking genomics and metabolomics to chart specialized metabolic diversity, Chem. Soc. Rev., 2020, 49. 3297
Arash Davoudi, Sean Chang, Hyun Gon Yoo, Anubhav Bajewa, Mihir Mongia, Hosein Mohimani*, ForestDSH: A Universal Hash Design for Discrete Probability Distributions., accepted, Data Mining and Knowledge Discovery, 2020.
Louis-Felix Nothias et. al. including Hosein Mohimani, Feature-based Molecular Networking in the GNPS Analysis Environment, accepted, Nature Methods, 2020.
Bahar Behsaz, Hosein Mohimani, Alexey Gurevich, Andrey Prjibelski, Mark Fisher, Fernando Vargas, Larry Smarr, Pieter Dorrestein, Joshua Mylne, Pavel Pevzner, De Novo Peptide Sequencing Reveals Many Cyclopeptides in the Human Gut and Other Environments, Cell Systems, 2020, 10 (1), 99-108.e5.
Liu Cao et.al., Hosein Mohimani*, MetaMiner: A Peptidogenomics Approach for the Discovery of Ribosomally Synthesized and Post-translationally Modified Peptides from Microbial Communities, Cell Systems, 2019, 9 (6) 600-608.e4.
Software
DEREPLICATOR+
Software programs for Dereplicator+ are available at https://ccms-ucsd.github.io/GNPSDocumentation/dereplicator%2B/http://cab.spbu.ru/software/dereplicator-plus/ . It's available as a web service at http://gnps.ucsd.edu/ProteoSAFe/static/gnps-theoretical.jsp.
DEREPLICATOR
Software programs for Dereplicator are available at https://ccms-ucsd.github.io/GNPSDocumentation/dereplicator/http://cab.spbu.ru/software/dereplicator/ . It's available as a web service at http://gnps.ucsd.edu/ProteoSAFe/static/gnps-theoretical.jsp.
METAMINER
Software programs for MetaMiner are available at https://github.com/ablab/npdtools . It's available as a web service at http://gnps.ucsd.edu/ProteoSAFe/static/gnps-theoretical.jsp .