Highlighted Publications

Zhu X^†, Zhang Y^†, Wang Y, Tian D, Belmont AS, Swedlow JR, and Ma J. Nucleome Browser: An integrative and multimodal data navigation platform for 4D Nucleome. Nature Methods, doi: https://doi.org/10.1038/s41592-022-01559-3, 2022.

Yang Y, Wang Y, Zhang Y, and Ma J. CONCERT: Genome-wide prediction of sequence elements that modulate DNA replication timing. RECOMB, 2022.

Zhang R^†,*, Zhou T^†, and Ma J*. Ultrafast and interpretable single-cell 3D genome analysis with Fast-Higashi. RECOMB, 2022.

Reilly A, Creamer JP, Stewart S, Stolla MC, Wang Y, Du J, Wellington R, Busch S, Estey EH, Becker PS, Fang M, Keel SB, Abkowitz JL, Soma LA, Ma J, Duan Z, and Doulatov S. Lamin B1 deletion in myeloid neoplasms causes nuclear anomaly and altered hematopoietic stem cell function. Cell Stem Cell, 29(4):577-592.e8, 2022.

Melamed A, Fitzgerald TW, Wang Y, Ma J, Birney E, and Bangham CRM. Selective clonal persistence of human retroviruses in vivo: radial chromatin organization, integration site and host transcription. Science Advances, 8(17):eabm6210, 2022.

Yang M and Ma J. Machine learning methods for exploring sequence determinants of 3D genome organization. Journal of Molecular Biology, doi: 10.1016/j.jmb.2022.167666, 2022.

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